Gene Coordinates hg38.
gene_coordinates_hg38.RdAll gene coordinates in respect to hg38. This data set is downloaded from ensembl.
Format
## `gene_coordinates_hg38` A data frame with 62754 rows and 5 columns.
- chrom
Factor. The chromosome (un-prefixed) that the gene is residing on.
- start
Integer. The start coordinates for the gene.
- end
Integer. The end coordinates for the gene.
- width
Integer. The width for the gene.
.
- strand
Defined as + forward or - reverse.
.
- type
Feature type name. Current allowed features are; gene, transcript, exon, CDS, Selenocysteine, start_codon, stop_codon and UTR
.
- tag
A collection of additional key value tags
.
- ccds_id
CCDS identifier linked to this transcript
.
- ensembl_gene_id
Character. Ensembl gene ID.
- hugo_symbol
Character. Gene symbol in Hugo format.
- source
Name of the program that generated this feature, or the data source (database or project name)
.
- score
A floating point value indiciating the score of a feature
.
- gene_version
The stable identifier version for the gene
.
- gene_source
The annotation source for this gene
.
- gene_biotype
The biotype of this gene
.
- transcript_id
The stable identifier for this transcript
.
- transcript_version
The stable identifier version for this transcript
.
- transcript_name
The symbold for this transcript derived from the gene name
.
- transcript_source
The annotation source for this transcript
.
- transcript_biotype
The biotype for this transcript
.
- exon_number
Position of this exon in the transcript
.
- exon_id
The stable identifier for this exon
.
- exon_version
The stable identifier version for this exon
.
- protein_id
Stable identifier for this transcript's protein
.
- protein_version
Stable identifier version for this transcript's protein
.